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   <front>
      <journal-meta>
         <journal-id journal-id-type="publisher-id">pnut</journal-id>
         <journal-id journal-id-type="allenpress-id">pnut</journal-id>
         <journal-title-group>
            <journal-title>Peanut Science</journal-title>
         </journal-title-group>
         <issn pub-type="ppub">0095-3679</issn>
         <issn pub-type="active">0095-3679</issn>
         <publisher>
            <publisher-name>American Peanut Research and Education Society</publisher-name>
            <publisher-loc/>
         </publisher>
      </journal-meta>
      <article-meta>
         <article-id pub-id-type="doi">10.3146/0095-3679(2007)34[96:DROPGT]2.0.CO;2</article-id>
         <article-categories>
            <subj-group subj-group-type="heading">
               <subject>Research Articles</subject>
            </subj-group>
         </article-categories>
         <title-group>
            <article-title>Differential Response of Peanut Genotypes to Water Stress</article-title>
            <alt-title alt-title-type="running-head">Drought-responsive Proteins of Peanut Seed</alt-title>
         </title-group>
         <contrib-group>
            <contrib contrib-type="author" xlink:type="simple">
               <name name-style="western">
                  <surname>Basha</surname>
                  <given-names>S. M.</given-names>
                  <x xml:space="preserve"> </x>
               </name>
               <xref ref-type="fn" rid="n101">
                  <sup>1,</sup>
               </xref>
               <xref ref-type="fn" rid="fn1">*</xref>
               <x xml:space="preserve">, </x>
            </contrib>
            <contrib contrib-type="author" xlink:type="simple">
               <name name-style="western">
                  <surname>Katam</surname>
                  <given-names>Ramesh</given-names>
                  <x xml:space="preserve"> </x>
               </name>
               <xref ref-type="fn" rid="n101">
                  <sup>1</sup>
               </xref>
               <x xml:space="preserve">, and </x>
            </contrib>
            <contrib contrib-type="author" xlink:type="simple">
               <name name-style="western">
                  <surname>Naik</surname>
                  <given-names>K. S. S.</given-names>
                  <x xml:space="preserve"> </x>
               </name>
               <xref ref-type="fn" rid="n102">
                  <sup>2</sup>
               </xref>
            </contrib>
         </contrib-group>
         
         <pub-date pub-type="ppub">
            <month>7</month>
            <year>2007</year>
         </pub-date>
         <volume>34</volume>
         <issue>2</issue>
         <fpage>96</fpage>
         <lpage>104</lpage>
         <permissions>
            <copyright-statement>American Peanut Research and Education Society</copyright-statement>
            <copyright-year>2007</copyright-year>
         </permissions>
         <related-article related-article-type="pdf"
                          xlink:href="0095-3679(2007)34[96:DROPGT]2.0.CO;2.pdf"
                          xlink:type="simple"/>
         <abstract>
            <title>Abstract</title>
            <p>Abiotic stresses cause water deficit in plant tissue resulting in various physiological, and biochemical changes brought about by altered expression of stress responsive genes that code for specific proteins. Peanut (<italic>Arachis hypogaea</italic> L.) plants were subjected to water stress (WS) for 7, 14 and 28 d and changes in seed polypeptide composition were determined. Results showed that WS had a variable effect on peanut seed polypeptide composition. WS affected polypeptides with apparent molecular weight (M<sub>r</sub>) around 70, 35, 25, 20, 18 and 14 kDa, and isoelectric points between 4.0 and 6.0 pH. The maximum response to WS occurred between 0 to 7 d, and additional periods (14 and 28 d) of stress caused only limited changes in seed polypeptide composition. These responses included over-expression, suppression, and appearance of new proteins in water-stressed seed compared to irrigated control. These data revealed that seed polypeptide composition of drought-tolerant peanut genotypes (Vemana and K-1375) was least affected while that of drought-susceptible genotypes (M-13 and JL-220) significantly altered due to WS. Based on this observation peanut genotypes are arranged into three groups viz: Group I, Group II and Group III. These data suggested that peanut genotypes falling in Group I may be considered Drought-tolerant, while the ones in Group II and Group III can be categorized as Moderately Drought-tolerant and Drought-susceptible, respectively. The proteins that were affected by WS are identified as Allergen Ara h1 (allergenic proteins) and methionine-rich proteins, arachin Ahy-3, 2S protein 1 and conglutin.</p>
         </abstract>
         <kwd-group>
            <kwd>drought-susceptible</kwd>
            <x xml:space="preserve">; </x>
            <kwd>drought-tolerant</kwd>
            <x xml:space="preserve">; </x>
            <kwd>genetic variation</kwd>
            <x xml:space="preserve">; </x>
            <kwd>peanut</kwd>
            <x xml:space="preserve">; </x>
            <kwd>proteins</kwd>
         </kwd-group>
         <counts>
            <page-count count="9"/>
         </counts>
      </article-meta>
   </front>
   <body>
      <sec id="s1">
			<title>Introduction</title>
         <p>Water stress (WS) can affect the structural attributes of membrane lipids, nucleic acids and proteins (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Vertucci1">Vertucci and Leopold, 1987</xref>). WS also enhances accumulation of sugars and free amino acids and decreases leaf turgidity, chlorophyll, ascorbic acid and soluble proteins in leafy vegetables (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Guehl1">Guehl <italic>et al.,</italic> 1993</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Irigoyen1">Irigoyen <italic>et al.,</italic> 1992</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Ishitani1">Ishitani <italic>et al.,</italic> 1995</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Keller1">Keller and Ludlow, 1993</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Nguyen1">Nguyen and Lamant, 1988</xref>). Plants subjected to water stress show changes in physiological and biochemical processes reflected in altered enzyme activities and exhibit enhanced activities of proteases, and increased concentration of low-molecular weight. nitrogenous compounds (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Jharna1">Jharna <italic>et al.,</italic> 2001</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-McCue1">McCue and Hanson, 1990</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Smirhoff1">Smirhoff and Colombe, 1989</xref>). Investigations of osmoregulation at the whole plant level indicated that free amino acids and proteins may play a significant role in response to water deficits and create a dynamic adjustment in nitrogen metabolism (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Stewart1">Stewart and Larher, 1980</xref>) contributing to osmotic adjustment (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Morris1">Morris <italic>et al.,</italic> 1990</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Jacobsen1">Jacobson <italic>et al.,</italic> 1992</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Delauney1">Delauney and Verma, 1993</xref>). Metabolic changes in response to water stress include reduction in photosynthetic activity (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Ritchie1">Ritchie <italic>et al.,</italic> 1990</xref>) and in protein synthesis (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Mason1">Mason <italic>et al.,</italic> 1988</xref>) and accumulation of organic acids such as malate, citrate and lactate accompanied by accumulation of proline, sugars and betaine (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Aspinall1">Aspinall and Paleg, 1981</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Bohnert1">Bohnert <italic>et al.,</italic> 1995</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Shinozaki1">Shinozaki and Yamaguchi, 1996</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Tabaeizadeh1">Tabaeizadeh, 1998</xref>). Exposure of plants to low water potential often leads to loss of cell turgor, and plants undergo osmotic adjustments by the rapid accumulation of abscisic acid (ABA) and osmoprotectants (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Bray1">Bray, 1997</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Grumet1">Grumet and Hanson, 1986</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Skriver1">Skriver and Mundy, 1990</xref>). Dehydrins and Rab-related proteins are typically accumulated (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Zhu1">Zhu, 2002</xref>) in response to low temperature, drought, salinity, or extra cellular freezing. These proteins are believed to be associated with desiccation tolerance, and their major function is to rescue the metabolic processes that are required for survival and regrowth under drought conditions. Our previous studies using dehydrin antibodies showed that peanut seed produces dehydrins following water stress, and the amount of dehydrins increase with increased stress period (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Mazhar1">Mazhar and Basha, 2002</xref>). Pre-harvest aflatoxin contamination is a major problem in semi-arid tropics where drought stress aggravates the <italic>Aspergillus</italic> infection and aflatoxin contamination in peanut (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Cole3">Cole <italic>et al.,</italic> 1989</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Sanders1">Sanders <italic>et al.,</italic> 1993</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Turner1">Turner <italic>et al.,</italic> 2000</xref>). <italic>Aspergillus</italic> thrive in extremely dry conditions and invade seeds under high temperatures causing severe damage in peanut seeds (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Widstorm1">Widstorm <italic>et al.,</italic> 2003</xref>). Drought stress is known to predispose peanut to aflatoxin contamination (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Blankenship1">Blankenship <italic>et al.,</italic> 1984</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Cole1">Cole <italic>et al.,</italic> 1982</xref> and <xref ref-type="bibr" rid="i0095-3679-34-2-96-Cole2">1985</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Hill1">Hill <italic>et al.,</italic> 1983</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Wilson1">Wilson and Stansell, 1983</xref>) possibly due to loss of the phytoalexin producing capacity of the peanut seed (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Wooton1">Wooton and Strange, 1985</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Dorner1">Dorner <italic>et al.,</italic> 1989</xref>) and altered seed composition. Occurrence of aflatoxin contamination depends upon maturity status, condition of the seed and duration of stress. This would suggest that, susceptibility of peanuts to aflatoxin contamination is inconsistent and vary depending upon genotype, environment, maturity and severity of stress. Exposure of peanut plants to water stress for 5 to 20 d showed significant increases in leaf amino acids, soluble sugars, proteins and polypeptide composition (<xref ref-type="bibr" rid="i0095-3679-34-2-96-AliAhmad1">Ali-Ahmad and Basha, 1998</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Amaregouda1">Amaregouda <italic>et al.,</italic> 1994</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Patil1">Patil and Patil, 1993</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Purushotham1">Purushotham <italic>et al.,</italic>, 1998</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Sharma1">Sharma <italic>et al.,</italic>, 1990</xref>). The genetic mechanisms leading to drought induced aflatoxin contamination are still unclear (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Holbrook1">Holbrook and Stalker, 2003</xref>). Depending upon the developmental stage or the external stimuli applied, the drought induced genes are classified as dehydrin (dehydration-induced), RAB (responsive to ABA), or LEA (late embryogenesis abundant) genes. Although genes induced by drought have been identified in a wide range of plant species (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Iuchi1">Iuchi <italic>et al.,</italic> 1996</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Oliver1">Oliver <italic>et al.,</italic> 1998</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Shinozaki1">Shinozaki and Yamaguchi, 1996</xref>), molecular basis of plant's tolerance to water stress remains far from being completely understood (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Cellier1">Cellier <italic>et al.,</italic> 1998</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Ingram1">Ingram and Bartels, 1996</xref>). Proteomics has proved to be a powerful tool for identification of protein and mechanisms involved in drought response and tolerance (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Hajhaeidri1">Hajhaeidri 2005</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Kawasaki1">Kawasaki <italic>et al.,</italic> 2000</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Riccardi1">Riccardi <italic>et al.,</italic> 1998</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Salekeh1">Salekeh <italic>et al.,</italic> 2002 a</xref> and <xref ref-type="bibr" rid="i0095-3679-34-2-96-Salekeh2">b</xref>) and has been used to identify stress induced proteins in several crops that may play a role in food and nutrition (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Haravarth1">Haravarth <italic>et al.,</italic> 2005</xref>). Several stress-induced genes have been isolated which play major role in understanding the molecular mechanism of drought. The ABA responsive gene expression modulated during seed development (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Choi1">Choi <italic>et al.,</italic> 1987</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Galau1">Galau <italic>et al.,</italic> 1987</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Gomez1">Gomez <italic>et al.,</italic> 1988</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Heikkila1">Heikkila <italic>et al.,</italic> 1984</xref>) have been isolated in response to plant dehydration (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Bray1">Bray, 1997</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Close1">Close <italic>et al.,</italic> 1989</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Guerrero1">Guerrero and Mullet, 1986</xref>) or low temperature (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Close2">Close, 1997</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Shinozaki1">Shinozaki and Yamaguchi, 1996</xref>). <xref ref-type="bibr" rid="i0095-3679-34-2-96-Zegzouti1">Zegzouti <italic>et al.</italic> (1997)</xref> have isolated a novel ethylene-responsive cDNA, designated ER5 by differential display which also showed strong homology to LEA protein family. In peanut, several stress induced genes such as dehydration-induced cDNA encoding a putative 9 cis-epoxycartenoid dioxygenase (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Wan1">Wan and Li, 2005</xref>) and phospholipase D (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Guo1">Guo <italic>et al.,</italic> 2006</xref>) have been isolated. All these genes have been found useful in germplasm screening for drought tolerance. <xref ref-type="bibr" rid="i0095-3679-34-2-96-Luo2">Luo <italic>et al.</italic> (2005 a</xref> and <xref ref-type="bibr" rid="i0095-3679-34-2-96-Luo3">b)</xref> have generated 1825 Expressed Sequence Tag (EST) libraries using leaf and seed tissue of two peanut lines, and found that 52.8% of the ESTs from leaf tissue and 78.6% of the ESTs from the pod tissue have homology to genes of known function. The major seed storage protein genes of arachin, conarachin and conglutin were sequenced and full-length cDNAs that encode isoforms of five arachin and six conglutin precursors were obtained (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Yan1">Yan <italic>et al.,</italic> 2005</xref>). Earlier, we have identified the isoforms of conglutin as methionine rich protein subunits (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Basha3">Basha and Pancholy, 1981</xref>). Several peanut seed and leaf derived ESTs were used to validate their function through microarray and real-time PCR, however, their association with drought and disease tolerance traits are not yet confirmed (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Cushman1">Cushman and Bohnert, 2000</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Keon1">Keon <italic>et al.,</italic> 2003</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Luo1">Luo <italic>et al.,</italic> 2003</xref>, <xref ref-type="bibr" rid="i0095-3679-34-2-96-Luo2">2005 a</xref> and <xref ref-type="bibr" rid="i0095-3679-34-2-96-Luo3">b</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Seki1">Seki <italic>et al.,</italic> 2001</xref>). Improvements in drought and disease tolerance characteristics are critical in peanut breeding programs aimed at reducing aflatoxin contamination. However, limited information is available on peanut seed components, especially the seed proteins and their role in maintaining drought tolerance in peanut. The primary objective of this research was to identify the proteins/polypeptides affected by drought stress for their possible use as markers for evaluating peanut germplasm to select drought-tolerant genotypes. Here, we report the seed polypeptides that are affected by water stress, and show that these polypeptides are differentially expressed among peanut genotypes under water stress. These proteins may be useful as potential markers for screening peanut genotypes to identify drought tolerant genotypes.</p>
      </sec>
      <sec id="s2">
         <title>Materials and Methods</title>
         <sec id="s2a">
            <title>Plant Material and Treatments</title>
            <p>Peanut (<italic>Arachis hypogaea</italic> L.) genotypes with diverse drought tolerance characteristics (A.N.G.R. Agricultural University, Kadiri, India) were used in this study. Drought-tolerant (DT) and drought-susceptible (DS) designations are given to these genotypes based on extensive yield and field performance trials conducted across India under rain-fed conditions through the National Research Center for Groundnut (NRCG). However, so far no attempts have been made to determine their biochemical and drought-response characteristics. DT genotypes included: Kadiri-5, Vemana, K-1319, K-1375, JL-220, CSMG-84-1, ICGS-44, ICGS-76, TAG-24, TMV-2, TPT-2, GG-2, TIR-31, JUG-37, and ICR-25. DS genotypes included: Kadiri-3, Kadiri-4, K-1340, K-1341, TKG-19A, M-13, and JL-24. The seed were surface sterilized with 70% ethanol, washed, and planted in three gallon pots. Peanut plants were maintained in the greenhouse and after 120 d they were subjected to WS by withholding irrigation. Control plants were irrigated daily. All treatments were conducted in triplicate, and the experimental period was from May 2004 to September 2004. Six replicates were maintained for each experiment and for each genotype. Peanut pods (Brown to Black stages; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Williams1">Williams and Drexler, 1981</xref>) were collected from control and treatments at 7, 14 and 28 d after the stress. At least 15 pods were collected from each replicate in each genotype which yielded over 30 seeds. The average seed size range from 0.5 to 2.0 cm depending on the genotype. The pods were shelled, seed were freeze-dried and stored at −80 C for further analysis.</p>
         </sec>
         <sec id="s2b">
            <title>Soil Water Potential</title>
            <p>The soil water potential was measured at weekly intervals using Quick Draw soil moisture probe (Model 2900F1, Soil moisture Equipment Corp., Santa Barbara, CA). The soil water potential was measured thrice for all the genotypes in all the six replicates, and the average values were taken. The average soil water potential was 10, 16, 28 and 38 cb at 7, 14, 21 and 28 d stress periods, respectively.</p>
         </sec>
         <sec id="s2c">
            <title>Protein Extraction</title>
            <p>The seed were ground into a meal using a mortar and pestle. The meal was defatted with hexane (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Basha3">Basha and Pancholy, 1981</xref>). A portion (50 mg) of the defatted meal was homogenized (1 ml) in dissociation buffer [1.2% (w/v) Tris, 2% (w/v) SDS and 5% (v/v) 2- mercaptoethanol], heated in a boiling water bath for 3 min and used for one-dimensional gel electrophoresis.</p>
         </sec>
         <sec id="s2d">
            <title>Quantification of Proteins</title>
            <p>The total protein content of the samples was determined as per the method of Bradford (1979). Bovine Serum Albumin (BSA) was used as the standard to quantify the total protein in the sample. Equal concentration (75 µg) of protein was loaded on each lane of SDS-PAGE.</p>
         </sec>
         <sec id="s2e">
            <title>One-dimensional Gel Electrophoresis</title>
            <p>The denatured protein (75 µg) was subjected to SDS-gel electrophoresis (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Laemmli1">Laemmli, 1970</xref>) in 11 % (w/v) polyacrylamide gel under denaturing conditions. The gel was run at 30 mA of current and Bromophenol Blue was used as the tracking dye. Following electrophoresis the proteins were detected using Coomassie blue R-250 (0.25%).</p>
         </sec>
         <sec id="s2f">
            <title>Two-dimensional Gel Electrophoresis (2-d Page)</title>
            <p>Defatted peanut meal was extracted with a buffer containing 9.3 M urea, 5 mM K<sub>2</sub>CO<sub>3</sub>, 0.5% (w/v) dithiothreitol and 2% (v/v) Nonidet P-40 and subjected to two-dimensional gel electrophoresis as described by <xref ref-type="bibr" rid="i0095-3679-34-2-96-Basha1">Basha (1979)</xref>. The above extraction buffer has been reported (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Basha1">Basha, 1979</xref>) to solublize more than 98% of the seed proteins and hence, the extract should represents all the seed protein population. The 2-D PAGE consisted of isoelectricfocusing in the first dimension and SDS-PAGE (12% polyacrylamide) in the second dimension. After electrophoresis, the gels were stained with Coommassie Blue R-250 (0.25%) to visualize the protein spots. Bromophenol Blue was included in the overlay buffer to determine the end point of the run.</p>
         </sec>
         <sec id="s2g">
            <title>Protein Sequencing and Characterization</title>
            <p>The proteins showing significant suppression in response to water stress were cut out from the 2D- PAGE gel and transferred into 2 ml Eppendorf tubes. The samples were digested with trypsin, subjected to Liquid Chromatography and the individual peptides were sequenced using Mass Spectrophotometer at the Protein Core Facility, University of Florida, Gainesville, FL. Amino acid sequences were compared with the sequences in non-redundant public sequence database of the NCBI by using BLAST program (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Altschul1">Altschul <italic>et al.,</italic> 1990</xref>).</p>
         </sec>
      </sec>
      <sec id="s3">
         <title>Results</title>
         <p>Qualitative and quantitative change in peanut seed proteins due to water stress was determined by comparing polypeptide profiles of control and stress treatments, and among peanut genotypes.</p>
         <sec id="s3a">
            <title>Effect of Water Stress on Peanut Seed Polypeptide Composition</title>
            <p>WS had a variable effect on peanut seed protein content and composition. These responses included over-expression, suppression and appearance of new proteins in water-stressed seed compared to the irrigated control seed. WS induced only minor changes in seed polypeptide composition of certain genotypes while in others it caused significant changes in seed polypeptide composition (<xref ref-type="fig" rid="i0095-3679-34-2-96-f01">Fig. 1</xref>). WS affected polypeptides with apparent molecular weight (M<sub>r</sub>) around 70, 35, 25, 20, 18 and 14 kDa. Most of the changes in seed polypeptide composition occurred between 0 and 7 d of WS, and additional periods (14 and 28 d) of stress caused only limited changes in seed polypeptide composition. The nature and characteristics of drought-responsive polypeptides was further determined by two-dimensional gel electrophoresis (2-D PAGE). The 2-D PAGE resolves proteins based on their isoelectric point (pI) and molecular weight (<xref ref-type="fig" rid="i0095-3679-34-2-96-f02">Fig. 2</xref>). Each protein spot on 2-D gel was numerically labeled for easy identification. We have identified over 22 protein spots on 2-D gel that are differentially expressed in DT and DS genotypes. The 2-D PAGE data clearly showed that WS had a significant effect on DS genotype M-13 (<xref ref-type="fig" rid="i0095-3679-34-2-96-f02">Fig. 2B</xref>) and minimal effect on DT genotype Vemana (<xref ref-type="fig" rid="i0095-3679-34-2-96-f02">Fig 2A</xref>). For example, in DT genotype Vemana, only three polypeptides # 7, 8, 12 (pI 4.0 and 6.0; molecular weight 22 and 32 kDa were affected (<xref ref-type="fig" rid="i0095-3679-34-2-96-f02">Fig 2A</xref>), while in DS genotype M-13, more than 16 polypeptides (protein spots with isoelectric points between 4.5 to 6.5 pH and molecular weights between 14 to 75 kDa were affected (<xref ref-type="fig" rid="i0095-3679-34-2-96-f02">Fig. 2B</xref>). In addition, we have found that in DS genotype, M-13, two proteins (#19 and #20) with isoelectric points between 4.5 and 5.0 pH and molecular weights between 15 and 19 kDa were over expressed and two proteins (#21 and #22 with isoelectric points between 6.25 and 7.25 pH and molecular weights between 22 and 25 kDa) were newly synthesized. Thus, the electrophoretic data clearly demonstrated that peanut genotypes respond differentially to WS by undergoing varying levels of changes in seed polypeptide composition. Overall, WS had the following effects on peanut seed polypeptide content and composition: a) decrease in certain polypeptide levels, b) increase in certain polypeptide levels and c) appearance of new polypeptides. The observed differences in seed polypeptide content and composition between the DT and DS genotypes could be attributed to differences in gene expression resulting in down-regulation, up-regulation or <italic>de novo</italic> synthesis of proteins. These results are consistent with our earlier report (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Jain1">Jain <italic>et al.,</italic> 2001</xref>) on peanut where we have shown up-regulation and down-regulation of several mRNA transcripts following WS, and identified 43 drought-responsive transcripts affected due to WS.</p>
            <fig id="i0095-3679-34-2-96-f01" position="float">
               <label>Figure 1</label>
               <caption>
                  <p><bold>Response of drought-tolerant (cv. Vemana) and drought-susceptible (cv. M-13) peanut genotypes to water stress. (Arrows indicate the polypeptides affected due to water stress)</bold></p>
               </caption>
               <graphic xlink:href="i0095-3679-34-2-96-f01.jpg"
                        mimetype="image"
                        position="float"
                        xlink:type="simple"/>
            </fig>
            <fig id="i0095-3679-34-2-96-f02" position="float">
               <label>Figure 2</label>
               <caption>
                  <p><bold>Differential response of drought-tolerant (A = cv. Vemana) and drought-susceptible (B = cv. M-13) peanut genotypes to water stress. Peanut seed proteins (75 µg) were resolved by isoelectricfocusing (IEF) in the first dimension and SDS-gel electrophoresis in the second dimension.</bold></p>
               </caption>
               <graphic xlink:href="i0095-3679-34-2-96-f02.jpg"
                        mimetype="image"
                        position="float"
                        xlink:type="simple"/>
            </fig>
         </sec>
         <sec id="s3b">
            <title>Differential Response of Peanut Genotypes to Water Stress</title>
            <p>Genetic differences in the response of peanut genotypes with varying drought tolerance characteristics such as DT and DS to WS was determined by subjecting them to different periods of WS. The results showed that peanut genotypes respond differentially to WS depending on genotype and duration of stress. WS had major impact on polypeptide composition of certain peanut genotypes while it had minor effect on others (<xref ref-type="fig" rid="i0095-3679-34-2-96-f03">Fig. 3</xref>). For example, seed polypeptide composition of genotypes M-13 and JL-220 was significantly altered due to WS while it had little effect on genotypes Vemana and CSMG-84-1 (<xref ref-type="fig" rid="i0095-3679-34-2-96-f03">Fig. 3</xref>). Likewise, in other genotypes such as K-1319 and Kadiri-4 only moderate changes were observed in seed polypeptide composition due to WS (<xref ref-type="fig" rid="i0095-3679-34-2-96-f03">Fig. 3</xref>). In M-13, most of the polypeptides (molecular weight between 10 to 100 kDa) were affected due to WS while in Vemana no major changes were observed in seed polypeptide composition. These responses may be the result of differential gene expression as observed by <xref ref-type="bibr" rid="i0095-3679-34-2-96-Jain1">Jain <italic>et al.,</italic> 2001</xref>; <xref ref-type="bibr" rid="i0095-3679-34-2-96-Devaiah1">Devaiah <italic>et al.,</italic> 2007</xref>), who reported that WS resulted in up-regulation, down-regulation and expression of new transcripts in peanut. It should be noted that the genotypes <italic>viz</italic>. Vemana, CSMG-84-1, Kadiri-4, TMV-2, etc., showing limited changes in polypeptide composition are categorized as DT while genotypes M-13, JL-220, JL-24, TKG-19A, etc., are placed under DS category based on their field performance and yield under rain-fed conditions (ANGR Agricultural University, Kadiri; National Research Council for Groundnut, Junagadh). Results of this study showing minimal changes in seed protein composition of DT genotypes is also consistent with our earlier report (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Jain1">Jain <italic>et al.,</italic> 2001</xref>) where we had observed expression of drought-responsive transcripts (PTRD-1, PTRD-2, PTRD-6, PTRD-10, PTRD-11, PTRD-16, PTRD-17) for a longer period (2 to 3 weeks) in DT line 72a (PI 145681) compared to DS genotype (1 week in Florunner). These data suggest that the DT genotypes maintain their seed protein levels by regulating gene expression for longer period than the DS genotypes.</p>
            <fig id="i0095-3679-34-2-96-f03" position="float">
               <label>Figure 3</label>
               <caption>
                  <p><bold>Genetic variation in the response of peanut genotypes to water stress. (C=Irrigated, T = Water Stressed, S = Protein Standard, D = Days)</bold></p>
               </caption>
               <graphic xlink:href="i0095-3679-34-2-96-f03.jpg"
                        mimetype="image"
                        position="float"
                        xlink:type="simple"/>
            </fig>
         </sec>
         <sec id="s3c">
            <title>Identification of Differentially Expressed Proteins</title>
            <p>The proteins that are suppressed due to water stress were sequenced and characterized. We have found that seven proteins (# 1, 13, 14, 15, 16, 17, 18) that were significantly suppressed in DS genotype M-13 have maintained their expression in DT genotype throughout the water stress treatment period for 28 d. Protein #1 was slightly over expressed in response to water stress in DT while it was suppressed in DS genotype. The MASCOT analysis shows the sequence similarity of Protein # 1 with allergen protein Ara h1 (P43238). The expression of proteins # 13 to #18 were not affected in DT genotype, while they were significantly suppressed in DS upon water stress. The proteins #13 and 16 are found to be isomer of arachin Ahy-3 (AY722687), proteins # 14 and 17 are isomers of 2S protein 1 of <italic>Arachis hypogaea</italic> (AY 722689) and protein # 15 and 18 the isomers of conglutin (AY848699). The sequences of these polypeptides were deposited in EMBL database (P43238, Q647G9, Q6PSU2, and Q647H2). These proteins are known to be the major seed storage proteins in legumes. Our results indicated that in DT (Vemana), expression levels of these proteins were maintained during water stress while in DS (M-13) they were significantly suppressed.</p>
         </sec>
         <sec id="s3d">
            <title>Grouping of Peanut Genotypes</title>
            <p>Electrophoretic evaluation of more than 30 peanut genotypes revealed differential protein expression following WS. Comparison of level of changes in seed polypeptide composition with that of drought-tolerance level revealed a negative correlation between them. Thus, DT genotypes showed little change in seed polypeptide composition while DS genotypes showed major change in seed polypeptide composition. The less drought-tolerant/drought-susceptible genotypes showed moderate changes in seed polypeptide content and composition. Based on this observation peanut genotypes are arranged into three groups: Group I = includes the genotypes showing limited (&#x3c;2) changes in seed polypeptide composition, Group II = includes genotypes showing moderate (2 to 6) changes in seed polypeptide composition and Group III= includes the genotypes showing major (&#x3e; 6) changes in seed polypeptide composition (<xref ref-type="fig" rid="i0095-3679-34-2-96-f04">Fig. 4</xref>). Thus, Group I includes most DT genotypes while Group II includes less drought-tolerant/drought-susceptible and Group III includes most DS genotypes.</p>
            <fig id="i0095-3679-34-2-96-f04" position="float">
               <label>Figure 4</label>
               <caption>
                  <p><bold>Grouping of peanut genotypes based on their response to water stress. (Group I: Drought-Tolerant; Group II: Moderately Drought-Tolerant; Group III: Drought – Susceptible)</bold></p>
               </caption>
               <graphic xlink:href="i0095-3679-34-2-96-f04.jpg"
                        mimetype="image"
                        position="float"
                        xlink:type="simple"/>
            </fig>
         </sec>
      </sec>
      <sec id="s4">
         <title>Discussion</title>
         <p>Water stress alters plant gene expression leading to the induction of specific gene/s (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Romo1">Romo <italic>et al.,</italic> 2001</xref>) accompanied by increased transcription and thus an increase of the corresponding proteins. In this study we have evaluated peanut genotypes for water stress-regulated proteins in order to identify the seed proteins affected by WS, and to understand the mechanisms associated with peanut plant acclimation and adaptation to drought. Identification of drought-responsive proteins would be useful to distinguish DT and DS peanut genotypes, and to understand the biochemical and molecular events responsible for drought-induced aflatoxin contamination of peanut. Some of the peanut genotypes used in this study were developed (ANGR Agri. Univ., Kadiri; National Research Center for Groundnut and ICRISAT, India) for drought tolerance, and are cultivated under rain-fed conditions in the arid and semi-arid regions of India. For example, the genotypes viz. Vemana, CSMG-84-1, Kadiri-4, and TMV-2 have been developed and released as DT cultivars for Andhra Pradesh, India. In addition, these genotypes are also being widely used in several breeding programs at Kadiri, Tirupathi, and Hyderabad, India for identifying peanut genotypes with high water use efficiency. Inclusion of these genotypes with proven drought-tolerance characteristics was helpful in identifying drought-responsive proteins as well as demonstrating that WS had limited effect on their seed protein composition. The genotypes, M-13, JL-220, JL-24 and TKG-19A which are classified as DS showed significant changes in seed polypeptide composition following WS, reflecting their DS trait. Peanut seed proteins have been grouped into arachin, conarachin / non-arachin (conglutin) based on their solubility (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Basha3">Basha and Pancholy, 1981</xref>). Our results clearly revealed that seed polypeptide composition, specifically arachin and conglutin proteins of DT genotypes were least affected while that of DS genotypes, significantly altered due to WS. Our data showed that proteins # 1 and 13 to18 were significantly suppressed in DS while they were unaffected in DT during water stress. Based on amino acid sequence data, protein # 1 is identified as Ara h1, the arachin subunit (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Kolarich1">Kolarich and Altman, 2000</xref>). Earlier, Basha and Pancholy (1981 a and b) have isolated the conglutin subunits and found two of them (# 15) to be rich in methionine (&#x3e;4%). The MRP (methionine-rich protein) is a 120 kDa protein and consists of six polypeptides with molecular weights ranging from 15.5 to 20 kDa and pI between 4.5 and 5.5 pH. Later, the gene sequences of these conglutin subunits were identified by <xref ref-type="bibr" rid="i0095-3679-34-2-96-Yan1">Yan <italic>et al.,</italic> (2005)</xref>. Our results show that the storage proteins, particularly the MRP subunits were highly suppressed in DS genotypes compared to DT genotypes due to WS. This data would suggest that the observed differential responses in subset of arachin and conglutin proteins could be employed to distinguish DT and DS peanut genotypes. Previously, our studies using Differential Display Reverse Transcriptase technique has enabled us to identify peanut transcripts affected by water stress (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Jain1">Jain <italic>et al.,</italic> 2001</xref>). The observations are consistent with our earlier findings (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Jain1">Jain <italic>et al.,</italic> 2001</xref>) which showed prolonged gene expression in DT genotypes compared to DS genotypes upon imposition of various levels of WS. In our previous studies, we have found transcripts that are severely affected (up-regulated, down-regulated or newly produced) due to water stress and are termed as Peanut Transcripts Responsive to Drought (PTRD). The down-regulated transcripts were studied by Northern Dot-Blot hybridization in drought-tolerant and drought-susceptible peanut lines. Results showed differential expression of these transcripts in the drought-tolerant and drought-susceptible lines indicating that these three transcripts (PTRD-1, PTRD-2 and PTRD-16) can be used as molecular tools to screen peanut germplasm for identifying drought-tolerant lines. Once the genotypes are classified, it is necessary to work with a large number of genotypes differing in their drought tolerance level to isolate differentially expressed transcripts induced upon water stress to address various stress related problems in peanut. Such markers would be of great value in the breeding programs aimed at identifying DT genotypes for developing drought- and aflatoxin-tolerant peanut genotypes. Although several molecular markers are currently available in peanut (<xref ref-type="bibr" rid="i0095-3679-34-2-96-Burrow1">Burrow and Blake, 1998</xref>), these have limited polymorphism in peanut and proved inadequate for identifying the drought specific peanut genotypes. Therefore, identification of drought responsive proteins would be useful to determine drought tolerance characteristics of peanut genotypes. Further studies are needed to clone and characterize the genes expressed due to drought stress and use them as probe to study the expression levels across genotypes.</p>
      </sec>
   </body>
   <back>
      <ack>
         <title>Acknowledgments</title>
         <p>This research was supported by a grant from the USAID, Peanut CRSP, Grant #FAM 51.</p>
      </ack>
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			<fn-group>
                <label><p><bold>Author Affiliations</bold></p></label>
            <fn id="n101">
               <label>
                  <sup>1</sup>
               </label>
               <p>Center for Viticulture and Small Fruit Research, Florida A&amp;M University, Tallahassee, FL 32317</p>
            </fn>
            <fn id="n102">
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               <p>Agricultural Research Station, ANGR Agricultural University, Kadiri, India</p>
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            <fn id="fn1" fn-type="corresp">
               <label>*</label>
               <p>Corresponding author (<email xlink:href="mailto:mehboob.sheikh@famu.edu" xlink:type="simple">mehboob.sheikh@famu.edu</email>).</p>
            </fn>
         </fn-group>
   </back>
</article>
